NAR Molecular Biology Database Collection entry number 1108
Zdobnov EM, Tegenfeldt F, Kuznetsov D, Waterhouse RM, Simão FA, Ioannidis P, Seppey M, Loetscher A, Kriventseva EV.
Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland, and Swiss Institute of Bioinformatics, Geneva, Switzerland
OrthoDB is a comprehensive catalogue of orthologous, genes inherited by extant species from a single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing to over 22 million genes from over 5000 species, now adding plants, archaea and viruses. In this update we focused on usability of this fast-growing wealth of data: updating the user and programmatic interfaces to browse and query the data, and further enhancing the already extensive integration of available gene functional annotations. Collating functional annotations from over 100 resources, and enabled us to propose descriptive titles for 87% of ortholog groups. Additionally, OrthoDB continues to provide computed evolutionary annotations and to allow user queries by sequence homology. The OrthoDB resource now enables users to generate publication-quality comparative genomics charts, as well as to upload, analyze and interactively explore their own private data.
Category: Protein sequence databases
Subcategory: Protein domain databases; protein classification
Go to the abstract in the NAR 2017 Database Issue.
Oxford University Press is not responsible for the content of external internet sites