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FLAGdb++


NAR Molecular Biology Database Collection entry number 128
Samson F., Brunaud V., DuchÊne S., De Oliveira Y., Caboche M., Lecharny A., Aubourg S.
UnitÉ de Recherche en GÉnomique VÉgÉtale (URGV), UMR INRA 1165 - CNRS 8114 -UniversitÉ d’Evry Val d’Essonne, 2 rue Gaston CrÉmieux, CP 5708, F-91057 Evry Cedex, France.

Database Description

FLAGdb++ is dedicated to the integration and visualisation of data for high throughput functional analysis of a fully sequenced genome, as illustrated for Arabidopsis. FLAGdb++ displays the predicted or experimental data in a position-dependent way and displays correlations and relationships between different features. FLAGdb++ provides for a given genome region, summarized characteristics of experimental materials like probe lengths, locations and specificities having an impact upon the confidence we will put onto the experimental results. A selected sub-set of the available information linked to a locus represented on an easy to interpret and memorable graphical display. Data are curated, processed and formatted before their integration into FLAGdb++. FLAGdb++ contains different options for easy back and forth navigation through many loci selected at the start of a session. It includes an original two-component visualisation of the data, a genome-wide and a local view, that are permanently linked and display complementary information. Density curves along the chromosomes may be displayed in parallel for suggesting correlations between different structural and functional data. FLAGdb++ is fully accessible at http://genoplante-info.infobiogen.fr/FLAGdb/.

Acknowledgements

This work is supported in part by a GENOPLANTE grant.

References

Samson F, Brunaud V, Duchene S, De Oliveira Y, Caboche M, Lecharny A, Aubourg S. FLAGdb++: a database for the functional analysis of the Arabidopsis genome. Nucleic Acids Res. 2004 Jan 1;32 Database issue:D347-D350. PMID: 14681431

Category: Plant databases

Go to the abstract in the NAR 2004 Database Issue.
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