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NAR Molecular Biology Database Collection entry number 1572
Zhan, S.1 and Reppert, S.M.1
1. Department of Neurobiology, University of Massachusetts Medical School, 364 Plantation Street, Worcester, MA 01605, USA

Database Description

The monarch butterfly (Danaus plexippus) is emerging as a model organism to study the mechanisms of circadian clocks and animal navigation, and the genetic underpinnings of long-distance migration (1). MonarchBase was developed as a public database for readily accessing the monarch genome and related biological processes (2). MonarchBase is an open-access, web-available portal that utilizes a variety of retrieving methods to access data conveniently and for integrating biological interpretations. The initial assembly of the monarch genome was released in 2011, and the biological interpretation of the genome focused on the butterfly’s migration biology (3). With the recent accomplishment of assembly improvement, MonarchBase provides access to an updated version of genome assembly (v3) upon which all data integration is based. Genome browser is available for browsing detailed annotations along the reference genome. Gene pages were designed with an integrated representation of the functional annotations, alternative gene models, expression profiles, and assignments to InterPro domains, Gene Ontology (GO) terms, and KEGG pathways. MonarchBase invites colleagues to submit manual curations and additional datasets for integration.


This work was supported by a grant of National Institutes of Health (GM086794-02S1).


1. Reppert S.M., Gegear R.J., and Merlin C. (2010) Navigational mechanisms of migrating monarch butterflies. Trends Neurosci., 33, 399-406.

2. Zhan, S. and Reppert, S.M. (2012) MonarchBase: the monarch butterfly genome database, Nucleic Acids Res., doi: 10.1093/nar/gks1057

3. Zhan, S., Merlin, C., Boore, J.L., and Reppert, S.M. (2011) The monarch butterfly genome yields insights into long-distance migration, Cell, 147, 1171-1185.

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