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NPIDB (Nucleic acids – Protein Interaction DataBase)


NAR Molecular Biology Database Collection entry number 1665
Sergei Spirin

Database Description

NPIDB (Nucleic acids – Protein Interaction DataBase) includes a collection of files in the PDB format containing structural information on DNA-protein and RNA-protein complexes, and a number of tools for analysis of those complexes: CluD, a program for the analysis of hydrophobic clusters on interfaces, detection of potential hydrogen bonds and water bridges, and visualization of structures with Jmol

References

1. Spirin,S. , Titov,M. , Karyagina,A. , Alexeevski,A. NPIDB: a database of nucleic acids-protein interactions. Bioinformatics 2007, 23 (23):3247-8 (doi: 10.1093/bioinformatics/btm519)

Subcategory: Protein structure

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