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O-GLYCBASE


NAR Molecular Biology Database Collection entry number 209
Julenius, K., Rapacki, K., Brunak, S., Gupta, R.
Center for Biological Sequence Analysis, The Technical University of Denmark, DK-2800 Lyngby, Denmark
Contact kj@cbs.dtu.dk

Database Description

O-GLYCBASE is a database of glycoproteins with O-linked and C-linked glycosylation sites. Entries with at least one experimentally verified glycosylation site have been compiled from protein sequence databases and literature. Each entry contains information about the site linkage, the glycan involved (if available), the species, sequence, a literature reference and http-linked cross-references to other sequence databases and to PubMed. Version 6.0 is the first version to include C-mannosylation of Trp residues and contains 242 protein entries, an approximate 22% increase over the last version. The O-GLYCBASE database is available through the WWW at http://www.cbs.dtu.dk/databases/OGLYCBASE/

Recent Developments

The database now includes C-mannosylation site information. The number of protein entries has increased approximately 22%.

Acknowledgements

We thank Jan Hansen for establishing the database and curation until 1998. This work was funded by the Danish National Research Foundation and Knut and Alice Wallenberg Foundation.


Go to the abstract in the NAR 1999 Database Issue.
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