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Rfam


NAR Molecular Biology Database Collection entry number 382
Griffiths-Jones, S.1, Bateman, A.1, Marshall, M.1, Khanna, A.2, Eddy, S.R.2
1Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
2Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA

Database Description

Rfam is a collection of multiple sequence alignments and covariance models representing non-coding RNA families. Rfam is available on the web in the UK at http://www.sanger.ac.uk/Software/Rfam/ and in the US at http://rfam.wustl.edu/. These websites allow the user to search a query sequence against a library of covariance models, and view multiple sequence alignments and family annotation. The database can also be downloaded in flatfile form and searched locally using the INFERNAL package (http://infernal.wustl.edu/). The first release of Rfam (1.0) contains 25 families, which annotate over 50000 non-coding RNA genes in the taxonomic divisions of the EMBL nucleotide database.

Subcategory: Nucleic acid structure

Go to the abstract in the NAR 2009 Database Issue.
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