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PANDIT


NAR Molecular Biology Database Collection entry number 608
EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK

Database Description

PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) database; nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as 'templates'; protein sequence alignments restricted to the family members for which nucleotide sequences are available; and inferred phylogenetic trees for each alignment.

References

Whelan, S., P.I.W. de Bakker, N. Goldman. (2003). Pandit: a database of protein and associated nucleotide domains with inferred trees. Bioinformatics 19:1556-1563. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12912837


Go to the abstract in the NAR 2006 Database Issue.
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