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DATF


NAR Molecular Biology Database Collection entry number 656
Anyuan Guo
Centre for BioInformatics, Peking University, Beijing, 100871, PR China

Database Description

The Database of Arabidopsis Transcription Factors (DATF) collects all Arabidopsis transcription factors (totally 1922 Loci; 2290 Gene Models) and classifies them into 64 families.The Version 2 of DATF was updated at July 2006. It is based on the Arabidopsis Sequence of TAIR <http://www.arabidopsis.org> version 6 (20051108). It uses not only locus (gene), but also gene model (transcript, protein) and the detail information is for each gene model not for locus. It add multiple alignment of the DNA-binding domain of each family, Neighbor-Joining phylogenectic tree of each family, the GO annotation, homolog with the Database of Rice Transcription Factors(DRTF) . It also keeps old information items such as the uniq cloned and sequenced information of about 1200 transcription factors, protein domains, 3Dstructure information with BLAST hits against PDB <http://www.pdb.org>, predicted Nuclear Location Signals, UniGene information, as well as links to literature reference.

Category: Plant databases
Subcategory: Arabidopsis thaliana

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