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TRBase


NAR Molecular Biology Database Collection entry number 684
Boby T., Patch A.-M. and Aves S.J.
School of Biosciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter EX4 4QD, UK

Database Description

TRbase is a database relating tandem repeats to gene locations and disease genes in the human genome. This database identifies both perfect and imperfect tandem repeats of 1-2000 bp unit lengths. Tandem repeats can be selected according to a number of different parameters including repeat unit length, copy number of the repeats, total tandem repeat length, percentage matches and the consensus repeat pattern. Tandem repeats can be searched for in combination with other important features including disease loci, gene names, gene features, disease keywords and OMIM (Online Mendelian Inheritance in Man) numbers. TRbase can be accessed from http://trbase.ex.ac.uk/.

Acknowledgements

This work was supported by a UK Biotechnology and Biological Sciences Research Council (BBSRC) studentship awarded to AMP.

References

1. Boby T, Patch A-M and Aves SJ (2005) TRbase: a database relating tandem repeats to disease genes for the human genome. Bioinformatics 21, 811-816


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