Skip Navigation

MamMiBase


NAR Molecular Biology Database Collection entry number 894
de Vasconcelos A.T.R.1, GuimarÃes A.C.R.1, Castelletti C.H.M.1, Caruso C.S.1, Ribeiro C.1, Yokaichiya F.1, ArmÔa G.R.G.3, Pereira G.S.P.1, da Silva I.T.1, Schrago C.G.2, Fernandes A.L.V.1, da Silveira A.R.1, Carneiro A.G.1, Carvalho B.M.1, Viana C.J.M.1, Gramkow D.1, Lima F.J.1, CorrÊa L.G.G.1, Mudado M.A.1, Nehab-Hess P.2, de Souza R.1, CorrÊa R.L.1 and Russo C.A.M.2
1LaboratÓrio Nacional de ComputaÇÃo CientÍfica LNCC/MCT, PetrÓpolis, RJ, Brazil
2UFRJ, Departamento de GenÉtica, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
3Instituto de Bio-Manguinhos, FIOCRUZ, Rio de Janeiro, RJ, Brazil
Contact atrv@lncc.br

Database Description

MamMibase, the Mammalian Mitochondrial Genome Database, is a relational database of complete mitochondrial genome sequences of over 100 Mammalian species. The database is useful for phylogenetic analysis, since it allows ready retrieval of nucleotide and amino acid alignments of 13 protein coding mitochondrial genes, based on their parameters values (sequence length, p-distances, base content, transition transversion ratio, gamma).

References

1. Vasconcelos AT, Guimaraes AC, Castelletti CH, Caruso CS, Ribeiro C, Yokaichiya F, Armoa GR, Pereira Gda S, da Silva IT, Schrago CG, Fernandes AL, da Silveira AR, Carneiro AG, Carvalho BM, Viana CJ, Gramkow D, Lima FJ, Correa LG, Mudado Mde A, Nehab-Hess P, Souza R, Correa RL, Russo CA. (2005) MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies. Bioinformatics 21: 2566-2567.


Go to the abstract in Bioinformatics, 2005, 21, 2566-2567
Oxford University Press is not responsible for the content of external internet sites