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Bioinformatics Links Directory

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Computer Related

Bio-* Programming Tools

Human Ageing Genomic Resources

NCBI C++ toolkit

Open Bioinformatics Foundation

Systems Biology Markup Language (SBML)

Cprogramming.com

NCBI C++ toolkit

The Java Tutorial

The Linux Cookbook

Linux DistroWatch

Linux Documentation Project

UNIX Tutorial for Beginners

Proteome Analysis at EBI

SAPS - Statistical Analysis of Protein Sequences

Statistics Notes in the British Medical Journal

UCLA Statistical Computing Portal

Web Development

Entrez Programming Utilities

caBIO Web Services

VBI PathPort project services

XML Central of DDBJ

Apollo Genome Annotation and Curation Tool

Bioinformatics Toolkit

The Chromosome 7 Annotation Project

DAVID Bioinformatics Resources

Ensembl Genome Browser

H-Invitational Database

IBM Bioinformatics and Pattern Discovery Group

IBM Genome Annotation Page

Integrated Microbial Genomes (IMG)

NCBI Influenza Virus Sequence Annotation Tool

NCBI Map Viewer

Ontology Lookup Service

Pegasys: workflow management for bioinformatics

TargetIdentifier

TIGR Software Tools

UCSC Human Genome Browser Gateway

Gene Prediction

IBM Bioinformatics and Pattern Discovery Group

TargetIdentifier

TIGR Software Tools

Virtual Ribosome

Mapping and Assembly

CAP3 Sequence Assembly Program

eBioinformatics

Genome Centres and Databases

Genome Database for Rosaceae

iCE - internet Contig Explorer

NCBI Clone Registry

Phred/Phrap/Consed System

TIGR Software Tools

Phylogeny Reconstruction

Berkeley Phylogenomics Group

Bioinformatics Toolkit

Joes Site - Phylogeny Programs

MIGenAS Toolkit

ModelTest Sever

NCBI Taxonomy Database

Orthologue Search Service

Ribosomal Database Project

UCMP Phylogeny Wing

Understanding Evolution

Virus Genotyping Tools

Sequence Polymorphisms

Cancer Genome Anatomy Project

DNA Methylation Database

HomozygosityMapper

International HapMap Project

ISTECH SNPAnalyzer

The Mouse SNP Database

SBT Interface - dbMHC

The SNP Consortium

Sequence Retrieval and Submission

The European Bioinformatics Institute (EBI)

Gene Set Builder

HGNC: HUGO Gene Nomenclature Committee

MIGenAS Toolkit

NCBI Human DNA Reference Sequence

NCBI Influenza Virus Sequence Annotation Tool

Structure and Sequence Feature Detection

Bioinformatics Toolkit

Codon Usage Database

CompareProspector

Drosophila DNase I footprint database

eBioinformatics

GCUA: Graphical Codon Usage Analyser

Gibbs Motif Sampler

IBM Bioinformatics and Pattern Discovery Group

MicroFootPrinter

OSU Bioinformatics and Computational Biology

The Sequence Manipulation Suite 2

Target Explorer

TargetIdentifier

TIGR Software Tools

T-Reg Comparator

Zinc Finger Tools

Tools For the Bench

Assembly PCR Oligo Maker

Bioinformatics Toolkit

eBioinformatics

GenePattern 2.0

GLUE, GLUE-IT, PEDEL, PEDEL-AA and DRIVeR

Medical Acronym Finder

PUNS: Primer-UniGene Selectivity Testing

siRNA Selection Server

Software for MacOSX at Mek&Tosj.com

Stitchprofiles.uio.no

Universal Probes

BCM Search Launcher

BCM Search Launcher Sequence Utilities

Bioinformatics Toolkit

eBioinformatics

HGNC: HUGO Gene Nomenclature Committee

Ontology Lookup Service

OSU Bioinformatics and Computational Biology

The Sequence Manipulation Suite 2

Software for MacOSX at Mek&Tosj.com

Virtual Ribosome

Bioinformatics Related News Sources

Color Base Pair

Genome News Network

Science.bio.org News

snowdeal.org > {bio,medical}informatics

The Bioinformatics Organization, Inc.

Canada Bioinformatics People

Canada Health Infoway

Canadian Bioinformatics Workshops

Canadian Society for Systems Biology

The European Bioinformatics Institute (EBI)

Genome Sciences Centre, Vancouver

HUMan MOLecular GENetics Portal Site

International Society for Computational Biology

McGill Centre for Bioinformatics

Montreal Proteomics Network (RPMPN)

National Center for Biotechnology Information

Open Bioinformatics Foundation

TCAG: The Centre for Applied Genomics, Toronto

UBC Bioinformatics Center (UBiC)

VanBUG - Vancouver Bioinformatics User Group

Courses, Programs and Workshops

123 Genomics: Courses, College Degrees and Training

Degree Programs in Bioinformatics and Computational Biology

A List of Bioinformatics Courses

Directories and Portals

Bioinformatics Links Directory

CMS Molecular Biology Resource

Color Base Pair

The European Bioinformatics Institute (EBI)

ExPASy Molecular Biology Server

Life Science Directory

Links to the Genetic World

National Center for Biotechnology Information

Women in Biology Internet Launch Pages

XML Central of DDBJ

2can Bioinformatics Educational Resource

CSHL Oral History Collection

DNA Learning Center, Cold Spring Harbor Laboratory

FOLDOC - Computing Dictionary

Genome British Columbia's Learning Centre

Glossary of Genetic Terms, NHGRI

GNN's Genomics Glossary

Great Experiments

Understanding Evolution

Tutorials and Directed Learning Resources

2can Bioinformatics Educational Resource

Canadian Bioinformatics Workshops

How to Use the Human Draft Sequence

Learn how to use NCBI resources

MIT OpenCourseWare

Users Guide to the Human Genome

cDNA, EST, SAGE

Allen Brain Atlas

Cancer Genome Anatomy Project

Genome Database for Rosaceae

GEO - Gene Expression Omnibus

Mammalian Gene Collection

Microarray Retriever

Mouse Atlas of Gene Expression

TargetIdentifier

TCAG: The Centre for Applied Genomics, Toronto

TIGR Gene Indices

Gene Regulation

CompareProspector

DAVID Bioinformatics Resources

Defining Transcriptional Programs in Vascular Endothelium

Drosophila DNase I footprint database

Gene Regulation

Gibbs Motif Sampler

IBM Bioinformatics and Pattern Discovery Group

MicroFootPrinter

OSU Bioinformatics and Computational Biology

Riboswitch finder

siRNA Selection Server

Target Explorer

T-Reg Comparator

Zinc Finger Tools

Gene Set Analysis

CPA - Comparative Pathway Analyzer

KEGG: Kyoto Encyclopedia of Genes and Genomes

Protein Expression

ExPASy 2-D PAGE databases and services

GelScape and GelBank

Alternative Splicing Database (ASD) Project

Alternative Splicing Gallery

Transcript Expression & Microarrays

Affymetrix NetAffx Analysis Center

ArrayProspector

BiologicalNetworks

Build your own arrayer

Canadian Microarray Resources

CompareProspector

Defining Transcriptional Programs in Vascular Endothelium

The European Bioinformatics Institute (EBI)

Expression Profiler

ExpressYourself

Gene Expression Data Analyzer

GEO - Gene Expression Omnibus

Microarray Gene Expression Database

Microarray Retriever

NHGRI Micorarray Project

Pathway Explorer

ScanAlyze, Cluster, TreeView

Stanford Microarray Database (SMD)

TIGR Software Tools

Apollo Genome Annotation and Curation Tool

Bioinformatics Toolkit

CBS DAS protein viewer

The Chromosome 7 Annotation Project

DAVID Bioinformatics Resources

Ensembl Genome Browser

Gene Set Builder

H-Invitational Database

IBM Bioinformatics and Pattern Discovery Group

IBM Genome Annotation Page

NCBI Human DNA Reference Sequence

NCBI Map Viewer

Pegasys: workflow management for bioinformatics

UCSC Human Genome Browser Gateway

Users Guide to the Human Genome

Vega Annotation Browser

Center for Law and Genetics

Democracy, Ethics and Genomics

Ethical, Legal, and Social Issues - Genome Research

Genethics.ca - The Genetics & Ethics page

NHGRI Policy and Ethics

Nature's Genome Gateway

Health and Disease

Canada Health Infoway

Cancer Genome Anatomy Project

The Chromosome 7 Annotation Project

HomozygosityMapper

Human Gene Mutation Database

Other Resources

Gene Ontology (GO) Consortium

Gene Set Builder

Genome Centres and Databases

HGNC: HUGO Gene Nomenclature Committee

Human Ageing Genomic Resources

Mammalian Gene Collection

Medical Acronym Finder

SBT Interface - dbMHC

The Sequence Ontology Project

TCAG: The Centre for Applied Genomics, Toronto

TIGR Gene Indices

Users Guide to the Human Genome

Sequence Polymorphisms

Cancer Genome Anatomy Project

DNA Methylation Database

HomozygosityMapper

International HapMap Project

ISTECH SNPAnalyzer

SBT Interface - dbMHC

The SNP Consortium

Nucleic Acids Research Database Issue

Users Guide to the Human Genome

Open Access Resources

Directory of Open Access Journals

Public Library of Science

Medical Acronym Finder

Model Organisms

DOE Joint Genome Institute Genome Portal

Ensembl Fugu Genome Browser

Ensembl Zebrafish Genome Browser

HGMP-RC Fugu Genome Project

IBM Genome Annotation Page

IMCB - Fugu Genome Project

TIGR Gene Indices

UCSC Fugu Genome Browse Gateway

Vega Annotation Browser

Berkeley Drosophila Genome Project

Drosophila DNase I footprint database

Ensembl Drosophila Genome Browser

Ensembl Mosquito Genome Browser

Genome Biology Release 3 of the Drosophila genome

The GRID - General Repository for Interaction Datasets

IBM Genome Annotation Page

Interolog/Regulog Database

Target Explorer

TIGR Gene Indices

UCSC Fruitfly Genome Browser Gateway

General Resources

Codon Usage Database

DOE Joint Genome Institute Genome Portal

Ensembl Genome Browser

euGenes: Genomic Information for Eukaryotic Organisms

GCUA: Graphical Codon Usage Analyser

Gene Ontology (GO) Consortium

Gene Set Builder

Genome Centres and Databases

GOLD: Genomes Online Database

IBM Genome Annotation Page

iCE - internet Contig Explorer

ISC Large-scale Sequencing Project Database

NCBI Assembly Archive

NCBI Taxonomy Database

Ontology Lookup Service

A Quick Guide To Sequenced Genomes

The Sequence Ontology Project

TIGR Gene Indices

CPA - Comparative Pathway Analyzer

DOE Joint Genome Institute Genome Portal

E. coli Genome Project

IBM Genome Annotation Page

In silico experiments with complete bacterial genomes

Integrated Microbial Genomes (IMG)

Microbe Browser

Microbial Genome Database

Microbial Genome Viewer

MicroFootPrinter

Pseudomonas Genome Project

TIGR Microbial Database

TIGR Protist Gene Indices

Virus Genotyping Tools

Allen Brain Atlas

Ensembl Mouse Genome Browser

Ensembl Rat Genome Browser

FANTOM - Functional Annotation of Mouse

IBM Genome Annotation Page

Mammalian Gene Collection

Mouse Atlas of Gene Expression

Mouse BAC Physical Map

Mouse Genetics: Concepts and Applications

Mouse Genome Informatics

Mouse Resources

The Mouse SNP Database

NCBI Human DNA Reference Sequence

Rat BAC Physical Map

Rat Genome Database (RGD)

TCAG: The Centre for Applied Genomics, Toronto

TIGR Gene Indices

UCSC Mouse Genome Browser Gateway

UCSC Rat Genome Browser Gateway

Vega Annotation Browser

Whole Mouse Catalog

Other Organisms

Daphnia Genomics Consortium

Dicty WorkBench

DOE Joint Genome Institute Genome Portal

Ensembl Genome Browser

Genotyping - NCBI

IBM Genome Annotation Page

Influenza Virus Resources

NCBI Influenza Virus Sequence Annotation Tool

Parasite-Genome

Poxvirus Bioinformatics Resource Center

TCAG: The Centre for Applied Genomics, Toronto

TIGR Gene Indices

UCSC SARS Genome Browser Gateway

Viral Bioinformatics

Other Vertebrates

Cancer Genome Anatomy Project

The Dog Genome Project

Ensembl Human Genome Browser

Mammalian Gene Collection

TCAG: The Centre for Applied Genomics, Toronto

TIGR Gene Indices

UCSC Human Genome Browser Gateway

Vega Annotation Browser

Arabidopsis Ensembl

The Arabidopsis Information Resource (TAIR)

DOE Joint Genome Institute Genome Portal

Genome Database for Rosaceae

Interolog/Regulog Database

Maize Genetics and Genomics Database

TIGR Plant Gene Indicies

C. elegans Gene Knockout Consortium

Ensembl C.elegans Genome Browser

IBM Genome Annotation Page

Interolog/Regulog Database

TIGR Gene Indices

UCSC C. briggsae Genome Browser Gateway

UCSC C. elegans Genome Browser Gateway

The GRID - General Repository for Interaction Datasets

IBM Genome Annotation Page

Interolog/Regulog Database

NCBI Human DNA Reference Sequence

S. pombe genome

TIGR Fungal Gene Indices

Virtual Library--Yeast

Yeast Resource Center

Other Molecules

GlyNest and CASPER

NetOGlyc Prediction Server

PubChem BioAssay Service

MetaPath Online

PubChem BioAssay Service

Small Molecules

PubChem BioAssay Service

2-D Structure Prediction

Bioinformatics Toolkit

CBS DAS protein viewer

IBM Bioinformatics and Pattern Discovery Group

Institute of Enzymology Servers

MIGenAS Toolkit

Protein Peeling

SAPS - Statistical Analysis of Protein Sequences

Servers at University College London

Services from Zhou Laboratory

3-D Structural Features

Andrej Sali Lab

ET Report Maker

FF - Fragment Finder

FoldMiner and LOCK 2

ICGEBnet Protein Tools

Protein Dipole Server

Protein Peeling

Servers at University College London

STING Millenium

3-D Structure Comparison

Andrej Sali Lab

Combinatorial Extension of the Optimal Path

Consensus Server

FoldMiner and LOCK 2

STING Millenium

3-D Structure Prediction

Andrej Sali Lab

Berkeley Phylogenomics Group

Bioinformatics Toolkit

ICGEBnet Protein Tools

Institute of Enzymology Servers

MIGenAS Toolkit

Molecular Modeling for Beginners

(PS)2 Protein Structure Prediction Server

RosettaAntibody

Servers at University College London

Services from Zhou Laboratory

Swiss-PdbViewer

3-D Structure Retrieval, Viewing

CBS DAS protein viewer

The European Bioinformatics Institute (EBI)

Molecular Modeling for Beginners

NCBI Structure Group

Practical Structural Databases

Swiss-PdbViewer

Annotation and Function

CBS DAS protein viewer

ET Report Maker

The European Bioinformatics Institute (EBI)

IBM Bioinformatics and Pattern Discovery Group

Proteome Analyst

PubChem BioAssay Service

Sequence Harmony

STING Millenium

Biochemical Features

The Amino Acid Repository

CBS DAS protein viewer

eBioinformatics

IBM Bioinformatics and Pattern Discovery Group

MASCOT (Matrix Science)

The Mendel Site

Protein Dipole Server

PubChem BioAssay Service

The Sequence Manipulation Suite 2

STING Millenium

Do-it-all Tools for Protein

BCM Search Launcher

Bioinformatics Toolkit

eBioinformatics

ExPASy Molecular Biology Server

Domains and Motifs

Berkeley Phylogenomics Group

Blocks WWW Server

Cascade PSI-Blast

CBS DAS protein viewer

The European Bioinformatics Institute (EBI)

FF - Fragment Finder

FoldMiner and LOCK 2

Gibbs Motif Sampler

IBM Bioinformatics and Pattern Discovery Group

The Mendel Site

NetOGlyc Prediction Server

One-Block CYRCA

QuasiMotiFinder

Servers at University College London

Interactions, Pathways, Enzymes

Argonne National Laboratory - Computational Biology Databases

BIND - The Biomolecular Interaction Network Database

BIOBASE Gene Regulation databases

BioCyc Knowledge Library

BiologicalNetworks

BRENDA - The Comprehensive Enzyme Information System

CNplot: Visualization of Pre-Clustered networks

CPA - Comparative Pathway Analyzer

DAVID Bioinformatics Resources

ENZYME - Enzyme nomenclature database

The GRID - General Repository for Interaction Datasets

Human Protein Reference Database

IntEnz: Integrated relational Enzyme database

Interolog/Regulog Database

KEGG: Kyoto Encyclopedia of Genes and Genomes

Metabolic PathFinding

MetaPath Online

MINT - a Molecular INTeractions database

The Osprey Network Visualization System

Pathway Explorer

Pathway Hunter Tool

PubChem BioAssay Service

Reactome - a knowledgebase of biological processes

SBT Interface - dbMHC

Services from Zhou Laboratory

Localization and Targeting

Bioinformatics Toolkit

CBS DAS protein viewer

Institute of Enzymology Servers

The Mendel Site

MIGenAS Toolkit

SAPS - Statistical Analysis of Protein Sequences

Servers at University College London

Molecular Dynamics and Docking

Andrej Sali Lab

Bioinformatics Toolkit

PubChem BioAssay Service

RosettaDock Server

Phylogeny Reconstruction

Berkeley Phylogenomics Group

Bioinformatics Toolkit

IBM Genome Annotation Page

Joes Site - Phylogeny Programs

MIGenAS Toolkit

NCBI Taxonomy Database

Orthologue Search Service

Ribosomal Database Project

STING Millenium

UCMP Phylogeny Wing

Understanding Evolution

Presentation and Format

eBioinformatics

The Sequence Manipulation Suite 2

Protein Expression

ExPASy 2-D PAGE databases and services

GelScape and GelBank

ExPASy Proteomics tools

The Global Proteome Machine

Human Protein Reference Database

HUPO Proteomics Standards Initiative

ISPIDER Central

KEGG: Kyoto Encyclopedia of Genes and Genomes

MASCOT (Matrix Science)

ProteinProspector

Proteios - The Open Source Proteomics Initiative

Proteome Analysis at EBI

Proteome Analyst

Sequence Comparison

Bioinformatics Toolkit

STING Millenium

IPI - International Protein Index

PIR - Protein Information Resource

Swiss-Prot and TrEMBL

Sequence Features

Bioinformatics Toolkit

CBS DAS protein viewer

eBioinformatics

The Sequence Manipulation Suite 2

Viral Bioinformatics

Sequence Retrieval

Cascade PSI-Blast

The European Bioinformatics Institute (EBI)

Gene Set Builder

HGNC: HUGO Gene Nomenclature Committee

MIGenAS Toolkit

Functional RNAs

Non-Coding RNA database

Ribosomal Database Project

Software.ncrna.org

General Resources

Ambion Inc. Technical Resources

RNA folding Servers

RNA Informatics Links

The Zuker Group

IBM Bioinformatics and Pattern Discovery Group

Riboswitch finder

Software.ncrna.org

Sequence Retrieval

Ribosomal Database Project

Software.ncrna.org

Structure Prediction, Visualization, and Design

siRNA Selection Server

Vienna RNA Package

Vienna RNA Websuite

Sequence Comparison

Alignment Editing and Visualization

CHAOS/DIALIGN WWW server

Kalign, Kalignvu, and Mumsa

MIGenAS Toolkit

SequenceJuxtaposer

Viral Bioinformatics

Analysis of Aligned Sequences

Berkeley Phylogenomics Group

Blocks WWW Server

Kalign, Kalignvu, and Mumsa

MIGenAS Toolkit

One-Block CYRCA

Sequence Harmony

Comparative Genomics

Berkeley Phylogenomics Group

DAVID Bioinformatics Resources

IBM Genome Annotation Page

Integrated Microbial Genomes (IMG)

ISC Large-scale Sequencing Project Database

MicroFootPrinter

TIGR Software Tools

Viral Bioinformatics

Multiple Sequence Alignments

Berkeley Phylogenomics Group

Bioinformatics Toolkit

CHAOS/DIALIGN WWW server

eBioinformatics

The European Bioinformatics Institute (EBI)

IBM Bioinformatics and Pattern Discovery Group

Kalign, Kalignvu, and Mumsa

MIGenAS Toolkit

PROMALS and PROMALS3D

Software.ncrna.org

Viral Bioinformatics

zPicture and multi-zPicture

Other Alignment Tools

Genotyping - NCBI

Pairwise Sequence Alignments

eBioinformatics

MIGenAS Toolkit

Software.ncrna.org

Viral Bioinformatics

zPicture and multi-zPicture

Similarity Searching

Cascade PSI-Blast

eBioinformatics

The European Bioinformatics Institute (EBI)

MIGenAS Toolkit

Viral Bioinformatics

Compilation Paper

Alphabetical List

Category/Summary List

Search Summaries

Bioinformatics Links Directory

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