BEARR
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NAR Web Server Collection entry number 1033
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Description
Batch Extraction and Analysis of cis-Regulatory Regions (BEARR) takes a list of gene identifiers (such as RefSeq and Unigene IDs), consensus patterns, and (optionally) a position weight matrix as input and returns a list of matches for the patterns in both the sense and anti-sense strands of the relevant genomic sequence. The user specifies what distance up and downstream from both the transcription start site and the 3' terminus to look for the patterns.
Classification
Category: DNA
Subcategory: Sequence Feature Detection
Category: Expression
Subcategory: Gene Regulation
Category: Expression
Subcategory: Microarrays
Category: Human Genome
Subcategory: Other Resources
Category: Model Organisms
Subcategory: Mouse and Rat
PubMed Abstract
PMID: 15215391
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