HHpred
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NAR Web Server Collection entry number 1137
Description
Based on the comparison of profile HMMs, HHpred takes a protein sequence or multiple sequence alignment as input and searches for remote homologues in an assortment of databases such as PDB, SMART and Pfam. The user can select either a local or global alignment method, and the search results can be used to generate 3D structural models.
Classification
Category: Protein
Subcategory: 3-D Structure Comparison
Category: Protein
Subcategory: 3-D Structure Prediction
Category: Sequence Comparison
Subcategory: Similarity Searching
PubMed Abstract
PMID: 15980461
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