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SIMAP

NAR Web Server Collection entry number 11650
Contact   t.rattei@wzw.tum.de

Description

The Similarity Matrix of Proteins (SIMAP) database provides a comprehensive and up-to-date pre-calculation of the protein sequence similarity matrix, sequence-based features and sequence clusters. Novel features of SIMAP include the expansion of the sequence space by including databases such as ENSEMBL as well as the integration of metagenomes based on their consistent processing and annotation. Furthermore, protein function predictions by Blast2GO are pre-calculated for all sequences in SIMAP and the data access and query functions have been improved.

Classification

Category: Protein
Subcategory: Databases

PubMed Abstract

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