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PhylomeDB v3.0

NAR Web Server Collection entry number 11801
Contact   tgabaldon@crg.es

Description

PhylomeDB is a public database for genome-wide collections of gene phylogenies (phylomes). It is also a major source for phylogeny-based orthology and paralogy predictions. For each protein-coding gene in a seed genome, the database provides original and processed alignments, phylogenetic trees derived from various methods and phylogeny-based predictions of orthology and paralogy relationships. Available seed species include model organisms such as human, yeast, Escherichia coli or Arabidopsis thaliana, but also alternative model species such as the human pathogen Candida albicans, or the pea aphid Acyrtosiphon pisum.

Classification

Category: DNA
Subcategory: Databases
Category: Model Organisms
Subcategory: Databases

PubMed Abstract

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