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FANTOM

NAR Web Server Collection entry number 11802
Contact   kawaji@gsc.riken.jp

Description

The Functional Annotation Of the Mammalian Genome (FANTOM) is a database for the transcriptional network that regulates macrophage differentiation. Data comes from cap analysis of gene expression (CAGE), sequencing mRNA 5'-ends with a second-generation sequencer to quantify promoter activities even in the absence of gene annotation. Additional genome-wide experiments complement the setup including short RNA sequencing, microarray gene expression profiling on large-scale perturbation experiments and ChIP-chip for epigenetic marks and transcription factors.

Classification

Category: Expression
Subcategory: Databases
Category: Human Genome
Subcategory: Databases

PubMed Abstract

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