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Tomato Functional Genomics Database

NAR Web Server Collection entry number 11897
Contact   zf25@cornell.edu

Description

Tomato Functional Genomics Database (TFGD) provides a comprehensive resource to store, query, mine, analyze, visualize and integrate large-scale tomato functional genomics data sets. Computational pipelines have been developed to process microarray, metabolite and sRNA data sets archived in the database, and TFGD provides downloads of all the analyzed results. TFGD is also designed to enable users to easily retrieve biologically important information through a set of efficient query interfaces and analysis tools, including improved array probe annotations as well as tools to identify co-expressed genes, significantly affected biological processes and biochemical pathways from gene expression data sets and miRNA targets, and to integrate transcript and metabolite profiles, and sRNA and mRNA sequences.

Classification

Category: Model Organisms
Subcategory: Databases

PubMed Abstract

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