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NAR Web Server Collection entry number 11908


ParameciumDB is a database built with the GMOD toolkit to integrate the genome and biology of the ciliate Paramecium tetraurelia. Post-genomic data from proteome and transcriptome studies has been incorporated along with predicted orthologs in 33 species, annotations from the community and publications from the scientific literature. Available tools include BioMart for complex queries, GBrowse2 for genome browsing, the Apollo genome editor for expert curation of gene models, a Blast server, a motif finder, and a wiki for protocols, nomenclature guidelines and other documentation. In-house tools have been developed for ontology browsing and evaluation of off-target RNAi matches.


Category: Model Organisms
Subcategory: Databases

PubMed Abstract

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