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PAIR

NAR Web Server Collection entry number 11913
Contact   xinchen@zju.edu.cn

Description

The predicted Arabidopsis interactome resource (PAIR) contains experimentally reported molecular interactions and predicted interactions in Arabidopsis thaliana. PAIR predicts interactions by a fine-tuned support vector machine model that integrates indirect evidences for interaction, such as gene co-expressions, domain interactions, shared GO annotations, co-localizations, phylogenetic profile similarities and homologous interactions in other organisms (interologs). PAIR features a user-friendly query interface, providing rich annotation on the relationships between two proteins. A graphical interaction network browser has also been integrated into the PAIR web interface to facilitate mining of specific pathways.

Classification

Category: Model Organisms
Subcategory: Databases

PubMed Abstract

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