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KUPS

NAR Web Server Collection entry number 11914
Contact   xwchen@ku.edu

Description

KUPS (The University of Kansas Proteomics Service) provides protein-protein interaction (PPI) data. It allows users to construct ready-to-use data sets of interacting protein pairs (IPPs), non-interacting protein pairs (NIPs) and associated features. Multiple filters and options allow the user to control the make-up of the IPPs and NIPs as well as the quality of the resultant data sets. Each data set is built from the overall database, from five primary databases: IntAct, HPRD, MINT, UniProt and the Gene Ontology. The IPP set can be set to specific model organisms, interaction types and experimental evidence. The NIP set can be generated using four different strategies, which can alleviate biased estimation problems.

Classification

Category: Protein
Subcategory: Databases

PubMed Abstract

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