NAR Web Server Collection entry number 1476

http://genome.cs.mcgill.ca/cgi-bin/FootPrinter3.0/FootPrinterInput2.pl

Contact   blanchem@mcb.mcgill.ca

FootPrinter3 is a web server for predicting transcription factor binding sites (TFBS) by using phylogenetic footprinting. FootPrinter3 extends the motif discovery algorithms of FootPrinter by making use of local multiple sequence alignment blocks when those are available and reliable, but also allowing finding motifs in unalignable regions.

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