T-COFFEE
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NAR Web Server Collection entry number 616
Contact cedric.notredame@europe.com
Description
The T-COFFEE site includes links to a collection of tools for computing, evaluating, and manipulating multiple alignments of protein sequences and structures. T-COFFEE is a protein multiple sequence alignment tool that is more accurate than ClustalW for sequences with less than 30 percent identity. Expresso (or 3DCoffee) aligns sequences using structural information. PROTOGENE turns amino acid alignments into CDS nucleotide alignments. M-Coffee is a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
Classification
Category: DNA
Subcategory: Phylogeny Reconstruction
Category: Protein
Subcategory: 3-D Structure Comparison
Category: Protein
Subcategory: Phylogeny Reconstruction
Category: Protein
Subcategory: Presentation and Format
Category: Sequence Comparison
Subcategory: Alignment Editing and Visualization
Category: Sequence Comparison
Subcategory: Analysis of Aligned Sequences
Category: Sequence Comparison
Subcategory: Multiple Sequence Alignments
Category: Sequence Comparison
Subcategory: Other Alignment Tools
Category: Sequence Comparison
Subcategory: Similarity Searching
PubMed Abstracts
PMID: 17526519
PMID: 16845081
PMID: 16845080
PMID: 15215345
PMID: 15201059
PMID: 12824354
PMID: 10964570
PMID: 9682054
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