Skip Navigation

ASPicDB


NAR Molecular Biology Database Collection entry number 1397

Database Description

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the functional annotation of predicted isoforms.

References

1. Y. Pirola, R. Rizzi, E. Picardi, G. Pesole, G. Della Vedova, P. Bonizzoni PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text. BMC Bioinformatics (2012), 13(Suppl 5):S2.
2. Martelli PL, D'Antonio M, Bonizzoni P, Castrignano T, D'Erchia AM, D'Onorio De Meo P, Fariselli P, Finelli M, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Rizzi R, Rossi I, Valletti A, Zauli A, Zambelli F, Casadio R, Pesole G. ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 2011 Jan;39(Database issue):D80-5. Epub 2010 Nov 4.
3. Castrignano T, D'Antonio M, Anselmo A, Carrabino D, D'Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G. ASPicDB: a database resource for alternative splicing analysis. Bioinformatics. 2008 May 15;24(10):1300-4. Epub 2008 Apr 3.
4. Castrignano T, Rizzi R, Talamo IG, De Meo PD, Anselmo A, Bonizzoni P, Pesole G. ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W440-3.


Go to the abstract in the NAR 2011 Database Issue.
Oxford University Press is not responsible for the content of external internet sites