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EzCatDB


NAR Molecular Biology Database Collection entry number 613
Nagano, Nozomi; Nakayama, Naoko; Ikeda, Kazuyoshi; Fukuie, Masaru; Yokota, Kiyonobu; Doi, Takuo; Kato, Tsuyoshi; Tomii, Kentaro
1Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064 Japan
2Japan Industrial Technology Association (JITA), Tsukuba Office, Chuou 4th Office 4-10, 1-1-1 Higashi, Tsukuba-shi, Ibaraki 305-0046, Japan
3Department of Computational Biology, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561, Japan
4Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi-shi, Saitama 332-0012, Japan

Database Description

Enzyme Catalytic Mechanism Database

Acknowledgements

We would like to thank Yuko Hasegawa, Keitarou Nonaka, Kenji Morita, Munehiro Sugiyama, Junko Some, Mayumi Hisanaga and Fuyan Sun, who assisted in the annotation of enzyme data and collection of the literature. This project was supported by grants from PRESTO and BIRD, which have been organized by the Japan Science and Technology Corporation (JST), and from a Grant-in-Aid for Scientific Research (B) and a Grant-in-Aid for Publication of Scientific Research Results, which have been organized by the Japan Society for the Promotion of Science (JSPS).

References

1. Nagano N. (2005). EzCatDB: The Enzyme Catalytic-Mechanism Database. Nucleic Acids Res., 33: 407-412.
2. Nagano N, Noguchi T, Akiyama Y. (2007) Systematic comparison of catalytic mechanisms of hydrolysis and transfer reactions classified in the EzCatDB database. PROTEINS: Structure, Function, and Bioinformatics.


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