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F1000 Evaluated Articles

Faculty of F1000 is a post-publication peer-review service that provides online evaluations of recently published research articles. A 'Faculty' of over 10,000 distinguished scientists from around the globe identify, evaluate and rate the most significant articles from biomedical research publications. The NAR articles listed below have been identified by F1000 as highly significant. Click on the links provided to access the full text versions of the articles and their F1000 evaluations. Please note that readers will need a personal or institutional subscription to F1000 in order the read the evaluations.

previous NAR F1000 articles

USP10 deubiquitylates the histone variant H2A.Z and both are required for androgen receptor-mediated gene activation
Draker, R., Sarcinella, E. and Cheung, P.
Nucleic Acids Research (2011) 10.1093/nar/gkq1352
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MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins
Potenza, E., Domenico, T., Walsh, I. and Tosatto, S.
Nucleic Acids Research (2014) 10.1093/nar/gku982
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PARP-2 and PARP-3 are selectively activated by 5' phosphorylated DNA breaks through an allosteric regulatory mechanism shared with PARP-1
Langelier, M., Riccio, A. and Pascal, J.
Nucleic Acids Research (2014) 10.1093/nar/gku474
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Chromosome position effects on gene expression in Escherichia coli K-12
Bryant, J., Sellars, L., Busby, S. and Lee, D.
Nucleic Acids Research (2014) 10.1093/nar/gku828
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Simulations of DNA topoisomerase 1B bound to supercoiled DNA reveal changes in the flexibility pattern of the enzyme and a secondary protein-DNA binding site
D'Annessa, I., Coletta, A., Sutthibutpong, T., Mitchell, J., Chillemi, G., Harris, S. and Desideri, A.
Nucleic Acids Research (2014) 10.1093/nar/gku654
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Direct regulation of topoisomerase activity by a nucleoid-associated protein
Ghosh, S., Mallick, B. and Nagaraja, V.
Nucleic Acids Research (2014) 10.1093/nar/gku804
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Histone H3 phosphorylation near the nucleosome dyad alters chromatin structure
North, J., Simon, M., Ferdinand, M., Shoffner, M., Picking, J., Howard, C., Mooney, A., van Noort, J., Poirier, M. and Ottesen, J.
Nucleic Acids Research (2014) 10.1093/nar/gku150
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Interactions of the yeast mitochondrial RNA polymerase with the +1 and +2 promoter bases dictate transcription initiation efficiency
Deshpande, A. and Patel, S.
Nucleic Acids Research (2015) 10.1093/nar/gku868
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Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling
Hayashi-Takanaka, Y., Yamagata, K., Wakayama, T., Stasevich, T., Kainuma, T., Tsurimoto, T., Tachibana, M., Shinkai, Y., Kurumizaka, H., Nozaki, N. et al.
Nucleic Acids Research (2011) 10.1093/nar/gkr343
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Exon-phase symmetry and intrinsic structural disorder promote modular evolution in the human genome
Schad, E., Kalmar, L. and Tompa, P.
Nucleic Acids Research (2013) 10.1093/nar/gkt110
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DNA topoisomerase VIII: a novel subfamily of type IIB topoisomerases encoded by free or integrated plasmids in Archaea and Bacteria
Gadelle, D., Krupovic, M., Raymann, K., Mayer, C. and Forterre, P.
Nucleic Acids Research (2014) 10.1093/nar/gku568
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Eukaryotic and archaeal TBP and TFB/TF(II)B follow different promoter DNA bending pathways
Gietl, A., Holzmeister, P., Blombach, F., Schulz, S., von Voithenberg, L., Lamb, D., Werner, F., Tinnefeld, P. and Grohmann, D.
Nucleic Acids Research (2014) 10.1093/nar/gku273
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Road rules for traffic on DNA-systematic analysis of transcriptional roadblocking in vivo
Hao, N., Krishna, S., Ahlgren-Berg, A., Cutts, E., Shearwin, K. and Dodd, I.
Nucleic Acids Research (2014) 10.1093/nar/gku627
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A role for WDR5 in TRA-1/Gli mediated transcriptional control of the sperm/oocyte switch in C. elegans
Li, T. and Kelly, W.
Nucleic Acids Research (2014) 10.1093/nar/gku221
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A concomitant loss of dormant origins and FANCC exacerbates genome instability by impairing DNA replication fork progression
Luebben, S., Kawabata, T., Johnson, C., O'Sullivan, M. and Shima, N.
Nucleic Acids Research (2014) 10.1093/nar/gku170
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Structural basis of lariat RNA recognition by the intron debranching enzyme Dbr1
Montemayor, E., Katolik, A., Clark, N., Taylor, A., Schuermann, J., Combs, D., Johnsson, R., Holloway, S., Stevens, S., Damha, M. et al.
Nucleic Acids Research (2014) 10.1093/nar/gku725
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Co-transcriptional recruitment of Puf6 by She2 couples translational repression to mRNA localization
Shahbabian, K., Jeronimo, C., Forget, A., Robert, F. and Chartrand, P.
Nucleic Acids Research (2014) 10.1093/nar/gku597
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A highly processive topoisomerase I: studies at the single-molecule level
Szafran, M., Strick, T., Strza?ka, A., Zakrzewska-Czerwi?ska, J. and Jakimowicz, D.
Nucleic Acids Research (2014) 10.1093/nar/gku494
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Hyperactive mariner transposons are created by mutations that disrupt allosterism and increase the rate of transposon end synapsis
Liu, D. and Chalmers, R.
Nucleic Acids Research (2014) 10.1093/nar/gkt1218
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TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells
Jin, C., Lu, Y., Jelinek, J., Liang, S., Estecio, M., Barton, M. and Issa, J.
Nucleic Acids Research (2014) 10.1093/nar/gku372
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Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition
Hayashi, T., Oshima, H., Mashima, T., Nagata, T., Katahira, M. and Kinoshita, M.
Nucleic Acids Research (2014) 10.1093/nar/gku382
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Aptamer-guided gene targeting in yeast and human cells
Ruff, P., Koh, K., Keskin, H., Pai, R. and Storici, F.
Nucleic Acids Research (2014) 10.1093/nar/gku101
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Human single-stranded DNA binding protein 1 (hSSB1/NAPB2) is required for the stability and repair of stalled replication forks
Bolderson, E., Petermann, E., Croft, L., Suraweera, A., Pandita, R., Pandita, T., Helleday, T., Khanna, K. and Richard, D.
Nucleic Acids Research (2014) 10.1093/nar/gku276
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Targeting and tracing of specific DNA sequences with dTALEs in living cells
Thanisch, K., Schneider, K., Morbitzer, R., Solovei, I., Lahaye, T., Bultmann, S. and Leonhardt, H.
Nucleic Acids Research (2014) 10.1093/nar/gkt1348
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ChIPing the cistrome of PXR in mouse liver
Cui, J., Gunewardena, S., Rockwell, C. and Klaassen, C.
Nucleic Acids Research (2010) 10.1093/nar/gkq654
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A small RNA controls a protein regulator involved in antibiotic resistance in Staphylococcus aureus
Eyraud, A., Tattevin, P., Chabelskaya, S. and Felden, B.
Nucleic Acids Research (2014) 10.1093/nar/gku149
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Topoisomerase II minimizes DNA entanglements by proofreading DNA topology after DNA strand passage
Martínez-García, B., Fernández, X., Díaz-Ingelmo, O., Rodríguez-Campos, A., Manichanh, C. and Roca, J.
Nucleic Acids Research (2014) 10.1093/nar/gkt1037
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Defining the functional footprint for recognition and repair of deaminated DNA
Baldwin, M. and O'Brien, P.
Nucleic Acids Research (2012) 10.1093/nar/gks952
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A ribozyme that triphosphorylates RNA 5'-hydroxyl groups
Moretti, J. and Müller, U.
Nucleic Acids Research (2014) 10.1093/nar/gkt1405
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The complex methylome of the human gastric pathogen Helicobacter pylori
Krebes, J., Morgan, R., Bunk, B., Spröer, C., Luong, K., Parusel, R., Anton, B., König, C., Josenhans, C., Overmann, J. et al.
Nucleic Acids Research (2013) 10.1093/nar/gkt1201
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Promoter RNA links transcriptional regulation of inflammatory pathway genes
Matsui, M., Chu, Y., Zhang, H., Gagnon, K., Shaikh, S., Kuchimanchi, S., Manoharan, M., Corey, D. and Janowski, B.
Nucleic Acids Research (2013) 10.1093/nar/gkt777
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Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes
Winsor, G., Lam, D., Fleming, L., Lo, R., Whiteside, M., Yu, N., Hancock, R. and Brinkman, F.
Nucleic Acids Research (2011) 10.1093/nar/gkq869
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Quantitation of DNA double-strand break resection intermediates in human cells
Zhou, Y., Caron, P., Legube, G. and Paull, T.
Nucleic Acids Research (2013) 10.1093/nar/gkt1309
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Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
DiCarlo, J., Norville, J., Mali, P., Rios, X., Aach, J. and Church, G.
Nucleic Acids Research (2013) 10.1093/nar/gkt135
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MetaRef: a pan-genomic database for comparative and community microbial genomics
Huang, K., Brady, A., Mahurkar, A., White, O., Gevers, D., Huttenhower, C. and Segata, N.
Nucleic Acids Research (2013) 10.1093/nar/gkt1078
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ATP-dependent nucleosome unwrapping catalyzed by human RAD51
North, J., Amunugama, R., Klajner, M., Bruns, A., Poirier, M. and Fishel, R.
Nucleic Acids Research (2013) 10.1093/nar/gkt411
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Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
Bikard, D., Jiang, W., Samai, P., Hochschild, A., Zhang, F. and Marraffini, L.
Nucleic Acids Research (2013) 10.1093/nar/gkt520
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Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine
Renciuk, D., Blacque, O., Vorlickova, M. and Spingler, B.
Nucleic Acids Research (2013) 10.1093/nar/gkt738
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